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Women in Science: Physicist Prerna Sharma on unlocking the mysteries of cell structures with her research

Editor's note: The Life of Science and Firstpost bring you this series profiling Indian women in Science. The challenges in Indian scientific life are many — more so for women taking up this path. This series honours those who beat the odds and serve as inspirations for the next generation of Indian science — a generation that is slowly and surely on its way to becoming gender equal.


By Priyanka Sacheti and Aashima Dogra

Prerna Sharma | Physicist | Indian Institute of Science, Bengaluru

Prerna Sharma’s lab desk is cluttered with stacks of papers and notes. A Native American doll sits in one corner. A cluttered desk is a sign of genius, some say. To this comment, Prerna responds only with a smile.

As she recounts her journey in research at the intersection of physics and biology, it became clear that her modest smile belies her achievements.

“I was a very academic-minded child, always interested in reading books,” she says. “In fact, I used to fight with my mom whenever I returned home from school — she wanted me to take a nap, while I wanted to finish my homework first!”

Years later, not only is Prerna taking forward a niche area of academics, she is also challenging popular notions of being a physics nerd in India. Physics is a gendered space, she agrees, while offering a refreshing outlook from the male-dominated realm of Indian physics.

“Biophysics is the use of physics tools to study biological systems. For example, a large effort in biophysics has been to determine protein structure using x-ray diffraction. This is the same technique that Rosalind Franklin used in 1952 to determine the molecular structure of  DNA,” Prerna explains of her domain of expertise.

Keeping up with cell membranes

We know a lot about the cells in our bodies, but some parts of the cell like the membrane — the skin of the cell — still remain a mystery. The cell membrane protects the interior of the cell by allowing certain substances into it while keeping others out. To do this, its structure must remain stable. This is what a large part of Prerna’s research has focussed on.

Physically, the cell membrane is a colloidal system — it could be thought of as a liquid made up of many different types of liquid droplets suspended in it. “Curiously, colloidal particles or droplets can spontaneously organise themselves into well-defined structures through a process known as self-assembly," Prerna says, setting up the context of her work on cell membranes.

Prerna in her lab. Photos by Priyanka Sacheti/The Life of Science

Prerna in her lab. Photos by Priyanka Sacheti/The Life of Science

Prerna’s research is inspired by this borderland, but she does not work with cell membranes directly. “The cell membrane actively regulates the transport of ions and materials across the cell. However, like most biological systems, it is very complex, heterogeneous and made of hundreds of different types of lipids and proteins,” she said. Its nanometer-thickness does not make it an easy physical system to study. So, Prerna employs a reductionist approach. Her research uses synthetic colloidal membranes — a far simpler biomimetic model that is 1,000 times thicker than cell membranes and made up of only one or two components.

“The colloidal membrane is a platform for membrane biophysics. This highly simplified system allows us to probe aspects of membrane mechanics and phase (liquid, solid or gas) behaviour in great depth and figure out generic physical mechanisms that may be relevant to cell membranes.”

Prerna prepares the colloidal membranes by mixing polymers with rod-shaped viruses. The result is a single layer of aligned rod-like particles, that have physical properties similar to that of cell membranes.

A colloidal membrane schematic from one of Prerna's post-doc papers. Different coloured rods represent differently sized viruses self-assembled.

A colloidal membrane schematic from one of Prerna's post-doc papers. The colour of the rods indicate their tilt with respect to the axis perpendicular to the plane of the membrane

This approach of using colloidal membranes in her experiments has proven very effective. In 2014, a research publication in the international journal Nature reported Prerna’s breakthrough discovery about how the cell membrane might be put together.

The big breakthrough

Prerna discovered how colloidal membranes could be kept structurally stable and active without the constituent droplets merging into a single droplet, contrary to how oil droplets merge or coalesce to separate themselves from water.

This work was inspired by the problem of formation of lipid rafts — tiny clusters of different kinds of  lipids and proteins within cell membranes. “One would intuitively expect that these clusters should all merge into one single cluster due to coalescence.” But in Prerna’s experimental conditions, this did not happen.

Image of Prerna's results: Lipid rafts suspended in a colloidal membrane.

Image of Prerna's results: Rafts of short-rods suspended in a colloidal membrane of longer rods

“The big question in the field was what kinds of interactions could stabilise lipid rafts against coalescence,” she said. For the first time, a model for how a cell membrane could be naturally put together was found. “Our experiment found one pathway to get a stable, cell membrane-like system.”

“At the beginning of my postdoctoral work, my advisor suggested an experimental set-up, which would enable us dynamically change the surrounding pressure of the colloidal membranes. While such a set-up is usually straightforward to put together, complications arose from the mechanical fragility of the membranes,” she recalls.

Prerna had been trying out other ideas of her own in parallel to this rather complicated experiment in the hope of observing colloidal membranes behave in a way that the laboratory had not previously encountered. She tried several samples before she made a breakthrough. Prerna recounts the moment, which took a while to sink in: “After seven months of trials, I stumbled on a sample wherein I observed for the first time finite-sized clusters of shorter rods within the host colloidal membranes made up of longer rods.” This study was amongst the first to show that membrane-mediated interactions between the clusters were good enough to impart them stability against coalescence.

Since joining IISc in August 2014, Prerna has been focusing on the mechanics and phase behaviour of biopolymers. Her lab works with purified bio-polymers — those found in living systems like viruses and bacteria. One of her ongoing projects is searching for good systems to mime the cell organelles called cilia to investigate their assembly and collective ‘beating’.

Cilia are thin, hair-like, microscopic extensions emerging from cell surfaces; in human beings, for instance, cilia can be found in the lungs, respiratory tract, and middle ear to keep airways clear of mucus and dirt, allowing us to breathe without irritation.

“Despite having detailed knowledge of the cilia structure, we still don’t understand how they collectively move,” says Prerna. An individual cilium cannot tell us anything about their collective behaviour, so Prerna is studying how the surrounding fluid influences the ‘beating’ movement of cilia. She uses algae called Chlamydomonas to demonstrate that cilia do not beat in isolation.

Physics, a gendered space


Prerna became a professor at the age of 28

Prerna became a professor at the age of 28

Prerna has been “incredibly lucky” to have had supportive parents and mentors. “I neither experienced discrimination nor discouragement for being a girl,” she said. She did, however, become aware of gender parities after joining her PhD lab. “I became aware of a lacuna in my educational journey, which proved to be a big handicap — I did not have the right aptitude for experimental research compared to some of my male classmates,” she reminisced.

Prerna feels that societal conditioning encourages boys to be more explorative while excluding girls from doing so. This is a big blow, particularly in pursuing physics, according to her. “Physics was taught to us in high school and college with a great emphasis on its theoretical framework. Both genders progress well up until advanced studies begin. At later stages, one realises that theory and experiments go hand-in-hand. So, though I wished to pursue experimental research work for my PhD, I wasn’t all that prepared to take it up”.

During her undergraduate years at St Stephens in Delhi, she was one of the 10 girls in a class of 30. By the time she was in the PhD programme at TIFR Mumbai, the gender ratio had already dropped to 1:9. At IISc, the situation is no better. There are three female professors out of 37 in the department.

“There is a policy failure in the system that lets women down as they inch closer to a professional career in academic research.” The “two-body problem” is one example of this. “Most of the times it is the woman who must sacrifice her career. The options for a married woman are laid out simply: give up her work or sign up to the challenging scenario of pursuing her career while living in a different place than her husband.”

Such a fate was unacceptable to the young Prerna, who became a professor at the age of 28. By then, finding a suitor for marriage became a daunting task. For a long time, she did not come across any prospective partners who would understand her passion for research and be an intellectual equal. The fact that quite a few of her female colleagues were either single or divorced was not comforting either. Prerna likes to call this “the two-body problem in reverse”.

With “a bit of luck”, Prerna said that her fears have faded away. She is happy to have found a supportive husband-to-be.

Mentee becomes the mentor

Prerna began her research life at the Department of Condensed Matter Physics and Material Science (DCMPMS) in TIFR, as her advisor Shankar Ghosh’s first student. She describes working there as an intense meaningful experience that laid the foundation for training in experimental physics. Prerna feels she connected well with her advisor because of the relatively small age gap of 10 years between them. “He inspired his students to be hands-on with experiments and he taught by example,” she added, recalling his ability to design experiments, set up apparatus, and integrate it all into a overall bigger picture. In her time there, Prerna’s findings about the adhesion of colloidal particles to glass substrates were published in Nature Physics.

Following her six years of PhD, Prerna joined as a post-doctoral fellow at Brandeis University, United States, under Zvonimir Dogic who specialises in biophysics. Under his mentorship, Prerna’s interest in biological structures blossomed.

The interview concluded with a tour of her lab — a hushed, reverential atmosphere occupied by students immersed in research, students who today are fortunate to be mentored by Prerna herself.

Read more from the 'Women in Science' series here.

THELIFEOFSCIENCE.COM is a feminist science media project on a mission to make Indian women scientists more visible and investigate the gender gap in Indian academia

Updated Date: Jun 25, 2018 11:55 AM

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